############################### filename: s2pt2_benthicCoverCodes.csv date: 2026-07-06 16:07:08.566633 description: Cross-referenced benthic codes from the three monitoring programs. For more details on how this was generated, see the markdown file and https://laurenkolinger.github.io/RRS/5af39e990ffb6776288f10373af7d1662148d323/qmd/resilienceMetrics/benthicCoverXrefBenthicCodes.html ############################### column names: tcrmp_Code tcrmp_Group tcrmp_Category tcrmp_Meaning tcrmp_trait vinps_TaxonCode vinps_TaxonScientificName vinps_TaxonDescription vinps_Category vinps_SubCategory csun_random_code csun_YZTK_code genus species column: tcrmp_Code description: code from TCRMP monitoring Data Type: character Unique Values: (showing 10 most frequent of 115 entries) TWS AA AC AF AG AGSP AH AL AMPH ANEM column: tcrmp_Group description: group from TCRMP monitoring Data Type: character Unique Values: (showing all 1 entries) Benthic Cover column: tcrmp_Category description: category from TCRMP monitoring Data Type: character Unique Values: (showing all 11 entries) Coral Macroalgae Calcareous Turf Non-living Other, Living Sponge Gorgonian Cyanobacteria Coral Condition Zoanthid column: tcrmp_Meaning description: meaning, more detail from TCRMP monitoring Data Type: character Unique Values: (showing 10 most frequent of 114 entries) Transect tape, weighted line, or shadow Peyssonneliaceae (includes Peyssonellia spp., Ramicrusta spp.) Acropora cervicornis Acropora palmata Acropora prolifera Agaricia agaricites Agaricia fragilis Agaricia grahamae Agaricia humilis Agaricia lamarcki column: tcrmp_trait description: trait from Darling et al 2012 Data Type: character Unique Values: (showing all 6 entries) competitive generalist NA stresstolerant weedy column: vinps_TaxonCode description: code from VINPS monitoring Data Type: character Unique Values: (showing all 90 entries) MALC MCOM MSQU DCYL ACER APAL NA OFAV OFRA ORBI SCOL DICT HALI LVAR CALG DCA P R S MALI MDAN MLAM MYCE MANG MAUR IRIG AMPH ANEM BALL BASB BASP BOSP CLIO CMOR CORALU CORJU CYAN DCOR ECAR ENGO ENSP EQUIP FAN GO HCUC LIAG MACA O PALY PEYS PLUME RAMI ROD ROPE SARG SPO TUBE UNK WHIP ZOAN SINT SIDE SSID OANN MCAV MMEA FFRA EFAS DLAB DSTO CNAT PCLI PSTR SRAD PAST PFUR PORI PPOR MFER MARE MDEC AFRA UAGA AGAR ALAM ISIN SHADOW SLATE TAPE WAND column: vinps_TaxonScientificName description: scientific name from VINPS monitoring Data Type: character Unique Values: (showing all 56 entries) Millepora alcicornis Millepora complanata Millepora squarrosa Dendrogyra cylindrus Acropora cervicornis Acropora palmata NA Orbicella faveolata Orbicella franksi Scolymia sp. Dictyota sp. Halimeda sp. Lobophora variegata Mycetophyllia aliciae Mycetophyllia danaana Mycetophyllia lamarckiana Mycetophyllia sp. Mussa angulosa Madracis auretenra Isophyllia rigida Amphiroa sp. Briareum asbestinum Cliona sp. Erythropodium caribaeorum Helioseris cucullata Liagora sp. Palythoa caribaeorum Peyssonnelia sp. Ramicrusta sp. Sargassum sp. Zoanthus sp. Stephanocoenia intersepta Siderastrea sp. Siderastrea siderea Orbicella annularis Montastraea cavernosa Meandrina meandrites Favia fragum Eusmilia fastigiata Diploria labyrinthiformis Dichocoenia stokesii Colpophyllia natans Pseudodiploria clivosa Pseudodiploria strigosa Siderastrea radians Porites astreoides Porites furcata Porites porites Mycetophyllia ferox Manicina areolata Madracis decactis Agaricia fragilis Undaria agaricites Agaricia sp. Agaricia lamarcki Isophyllia sinuosa column: vinps_TaxonDescription description: description of the taxon from VINPS monitoring Data Type: character Unique Values: (showing all 89 entries) Millepora alcicornis - coral Millepora complanata - coral Millepora squarrosa - coral Dendrogyra cylindrus - coral Acropora cervicornis - coral Acropora palmata - coral NA Orbicella faveolata - coral Orbicella franksi - coral Orbicella complex - coral Scolymia species - coral Dictyota species - maca Halimeda species - maca[calc] Encrusting fan-leaf algae Crustose coralline algae Dead coral w/ turf algae Pavement Rubble Sand/Sediment Mycetophyllia aliciae - coral Mycetophyllia danaana - coral Mycetophyllia lamarckiana - coral Mycetophyllia species - coral Mussa angulosa - coral Madracis auretenra - coral Isophyllia rigida - coral Amphiroa species - maca[calc] Anemone - other Ball Sponge Briareum asbestinum - gorgo Barrel/Vase Sponge - spo Boring Sponge - spo Cliona sp. - sponge Corallimorpharians - other Hard Coral, unknown species - coral Coral juvenile - coral Cyanobacteria - maca Diseased Coral - discor Erythropodium caribaeorum - gorgo Encrusting Gorgonian - gorgo Encrusting Sponge - sponge Equipment Soft Coral - Sea Fan - gorgo Gorgonians - gorgo Helioseris cucullata - coral Liagora species - maca Macro Algae - maca Other Organisms Palythoa caribaeorum - zoant Peyssonneliaceae (includes Peyssonellia spp., Ramicrusta spp.) Soft Coral - Plume form - gorgo Soft Coral - Rod form - gorgo Rope Sponge - spo Sargassum species - maca Sponge - sponge Tube Sponge - spo Unknown or unidentifiable cover type Soft Coral - Whip form Zoanthus species Stephanocoenia intersepta - coral Siderastrea species - coral Siderastrea siderea - coral Orbicella annularis - coral Montastraea cavernosa - coral Meandrina meandrites - coral Favia fragum - coral Eusmilia fastigiata - coral Diploria labyrinthiformis - coral Dichocoenia stokesii - coral Colpophyllia natans - coral Pseudodiploria clivosa - coral Pseudodiploria strigosa - coral Siderastrea radians - coral Porites astreoides - coral Porites furcata - coral Porites branching species - coral Porites porites - coral Mycetophyllia ferox - coral Manicina areolata - coral Madracis decactis - coral Agaricia fragilis - coral Undaria agaricites - coral Agaricia species - coral Agaricia lamarcki - coral Isophyllia sinuosa - coral Too dark to see enough detail - shadow Metadata image (beginning of transect) Tape Wand column: vinps_Category description: category from VINPS monitoring Data Type: character Unique Values: (showing all 12 entries) CORAL NA ALGAE SUBST OTHER SPONGE GORGO DISCOR EQUIP ZOANT UNK SHADOW column: vinps_SubCategory description: subcategory from VINPS monitoring Data Type: character Unique Values: (showing all 14 entries) CORAL NA MACA CALG DCA SUBST OTHER SPONGE GORGO DISCOR EQUIP ZOANT UNK SHADOW column: csun_random_code description: taxa code from CSUN random sites (all but YZ TK) Data Type: character Unique Values: (showing all 27 entries) Millepora Dendrogyra Acropora Orbicella Scolymia Porites percentCover_CTB Mycetopohyllia Mussa Madracis Isophyllia Helioseris percentCover_macroalgae Solenastrea Stephanocoenia Siderastrea Montastrea Meandrina Favia Eusmilia Diploria Dichocoenia Colpophyllia Manicina Agaricia Isophyllastrea column: csun_YZTK_code description: taxa code from original (nonrandom) CSUN sites YZ and TK Data Type: character Unique Values: (showing all 4 entries) percentCover_allCoral percentCover_macroalgae percentCover_CTB column: genus description: coral genus Data Type: character Unique Values: (showing all 30 entries) Millepora Dendrogyra Acropora Orbicella Scolymia Porites NA Mycetophyllia Mussa Madracis Isopyhyllastrea unknown unknown juv. Helioseris Oculina Solenastrea Tubastraea Stephanocoenia Siderastrea Montastraea Meandrina Favia Eusmilia Diploria Dichocoenia Colpophyllia Pseudodiploria Manicina Agaricia Isophyllia column: species description: coral species Data Type: character Unique Values: (showing all 57 entries) alcicornis complanata squarrosa cylindrus cervicornis palmata prolifera faveolata franksii species complex lacera cubensis spp. branneri NA aliciae daniana lamarckiana angulosa mirabilis rigida coral spp. cucullata diffusa bournoni hyades coccinea intercepta siderea annularis cavernosa meandrites fragum fastigiata labyrinthiformis stokesii natans clivosa strigosa radians divaricata astreoides furcata Porites spp. porites ferox areolata decactis formosa fragilis agaricites grahamae humilis tenuifolia undata lamarcki sinuosa